About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14957765_14958281_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14957765 - 14958281
Intron Length:
517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTGCA
5'SS Class:
major
3'SS Sequence:
GCATGTTTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CCCTCTTTCATG
Flanking Amino Acid:
VVNPNYCLGPLSWENLRIPG
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.3
71.1
34.7
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
74.7
0.56
1
65
45.4
Minor 5ss
28.9
-2.4
3
31.7
35.3
Minor BPS
48.7
-0.2
1.8
49.65
45.6

Associated Gene:

Gene:
HGSNAT
Ensembl Gene ID:
ENSAPLG00000014020
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014609
14951579 - 14962004
10426