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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14960372_14960502_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14960372 - 14960502
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTATTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
GTTATATAAACT
Flanking Amino Acid:
SRFLIWSIVMGIISAILTKC
Intron Amino Acid Position:
569

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
70.6
41.3
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
81.4
0.71
0.8
74.2
35.2
Minor 5ss
33.7
-1.9
2.9
38.1
40.9
Minor BPS
51
0.11
2
74.44
41.9

Associated Gene:

Gene:
HGSNAT
Ensembl Gene ID:
ENSAPLG00000014020
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014609
14951579 - 14962004
10426