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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14960816_14961822_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14960816 - 14961822
Intron Length:
1007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
CTGTGCTTATTT
Flanking Amino Acid:
LWSGAPFFYPGMNSILVYIG
Intron Amino Acid Position:
630

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.2
83.2
30.8
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
83.7
0.76
0.8
81.1
35.6
Minor 5ss
30.5
-2.2
2.5
33.7
41.5
Minor BPS
52
0.14
2.1
71.02
46.6

Associated Gene:

Gene:
HGSNAT
Ensembl Gene ID:
ENSAPLG00000014020
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014609
14951579 - 14962004
10426