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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14971770_14972852_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14971770 - 14972852
Intron Length:
1083

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGTACA
5'SS Class:
major
3'SS Sequence:
GTTCTTTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAA
U12 Branch Point Sequence:
TTCTTTTTATAG
Flanking Amino Acid:
TCHFALGEYRQTCEKVLDLM
Intron Amino Acid Position:
542

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
73.3
37.4
Major BPS
67.7
0.44
1
58.3
38.4
Major PPT
84.7
0.78
0.7
80.1
32
Minor 5ss
41.7
-0.9
2.4
43.6
43.6
Minor BPS
51.4
-0
1.7
59.45
42.9

Associated Gene:

Gene:
INTS10
Ensembl Gene ID:
ENSAPLG00000014036
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025045
14963036 - 14983684
20649
ENSAPLT00000014695
14963036 - 14983684
20649