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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14973655_14974272_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14973655 - 14974272
Intron Length:
618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTA
5'SS Class:
strong_major
3'SS Sequence:
TCGTCACTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTCAT
U12 Branch Point Sequence:
TTTTCGTCACTT
Flanking Amino Acid:
LLYSLESLDKEFTRICLSWK
Intron Amino Acid Position:
463

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.9
78.7
37.2
Major BPS
69.6
0.49
1.3
73.6
41.8
Major PPT
76.5
0.6
0.9
69.2
36
Minor 5ss
34.3
-1.8
3.4
47
48.3
Minor BPS
49.4
0.03
2.4
79.83
42.7

Associated Gene:

Gene:
INTS10
Ensembl Gene ID:
ENSAPLG00000014036
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014695
14963036 - 14983684
20649
ENSAPLT00000025045
14963036 - 14983684
20649