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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_14979708_14980046_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14979708 - 14980046
Intron Length:
339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTATTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TGTTTTCTATTT
Flanking Amino Acid:
SPVNCFRKLFVCDVLPLIIN
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.3
32.8
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
86.9
0.83
0.7
86.2
26.5
Minor 5ss
33.3
-1.9
2.9
41.3
44.8
Minor BPS
49.5
0.05
1.9
72.55
39

Associated Gene:

Gene:
INTS10
Ensembl Gene ID:
ENSAPLG00000014036
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025045
14963036 - 14983684
20649
ENSAPLT00000014695
14963036 - 14983684
20649