Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15026466_15027243_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15026466 - 15027243

Intron Length:

778

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTATC

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTCTCCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTGAC

U12 Branch Point Sequence:

AAGTTGCTGACT

Flanking Amino Acid:

EVKSILENTSKSANFKNFTF

Intron Amino Acid Position:

318

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.3

0.9

0.8

88.1

25.2

Major BPS

66.3

0.4

1.1

41.8

Major PPT

82.8

0.74

0.7

77.1

31.7

Minor 5ss

-0.9

2.8

55.1

35.9

Minor BPS

44.1

-0.3

2.3

62.26

41.9

Associated Gene:

Gene:

CSGALNACT1

Ensembl Gene ID:

ENSAPLG00000014335

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014938

14989350 - 15031274

41925

ENSAPLT00000035693

15006396 - 15031274

24879

ENSAPLT00000021641

15010152 - 15031274

21123