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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15027423_15027830_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15027423 - 15027830
Intron Length:
408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGCTG
5'SS Class:
major
3'SS Sequence:
TTGTCATTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AGCTTTTTAAAA
Flanking Amino Acid:
LNSCRLNTQPGKKVFYPVLF
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.1
57.3
47
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.4
0.73
0.9
73.9
40.7
Minor 5ss
33.4
-1.9
3.6
47.4
48
Minor BPS
59.7
0.3
1.4
63.06
37.2

Associated Gene:

Gene:
CSGALNACT1
Ensembl Gene ID:
ENSAPLG00000014335
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035693
15006396 - 15031274
24879
ENSAPLT00000021641
15010152 - 15031274
21123
ENSAPLT00000014938
14989350 - 15031274
41925