About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15036535_15038035_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15036535 - 15038035
Intron Length:
1501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAATTC
5'SS Class:
major
3'SS Sequence:
CCTCTGCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AGTGTTTTAACT
Flanking Amino Acid:
TLADLVDYHKEEAITSMGKE
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
0.9
74.4
29.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
67.6
0.4
0.9
61.7
33.6
Minor 5ss
36.4
-1.5
3.3
49.9
46.6
Minor BPS
68
0.64
1.3
78.3
38.2

Associated Gene:

Gene:
SH2D4A
Ensembl Gene ID:
ENSAPLG00000014421
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015033
15036442 - 15046672
10231