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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15037791_15044788_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
15037791 - 15044788
Intron Length:
6998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TGCTTCTCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAC
U12 Branch Point Sequence:
GTTTTTCTACCA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.5
40.6
Major BPS
63.9
0.35
1.3
64.5
42.5
Major PPT
77.9
0.63
0.8
72.3
32.5
Minor 5ss
40.6
-1
2.8
48.1
41.6
Minor BPS
50
-0
1.9
68.01
38.6

Associated Gene:

Gene:
CDKL2
Ensembl Gene ID:
ENSAPLG00000014440
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041303
15037714 - 15064779
27066