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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15038257_15038730_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15038257 - 15038730
Intron Length:
474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAG
U12 Branch Point Sequence:
TTCTCTTCAGCT
Flanking Amino Acid:
TTDTIAPWFHGILTSQKAEE
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.3
29.7
Major BPS
63.4
0.33
1.6
73.6
41.8
Major PPT
71.5
0.48
1
66.7
39.5
Minor 5ss
37.5
-1.4
2.9
47.5
42.3
Minor BPS
60.4
0.4
1.8
79.98
42.3

Associated Gene:

Gene:
SH2D4A
Ensembl Gene ID:
ENSAPLG00000014421
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015033
15036442 - 15046672
10231