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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15042136_15042543_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15042136 - 15042543
Intron Length:
408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAGCAT
U12 Branch Point Sequence:
ATTTCTTTCACA
Flanking Amino Acid:
CHMRKGGFPQTKEAPKRNSE
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
82.3
32.2
Major BPS
55.5
0.14
1.4
66
40.9
Major PPT
85.1
0.79
0.7
80.2
31.2
Minor 5ss
40.5
-1.1
2.8
53
44.2
Minor BPS
71.2
0.66
1.7
81.43
34

Associated Gene:

Gene:
SH2D4A
Ensembl Gene ID:
ENSAPLG00000014421
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015033
15036442 - 15046672
10231