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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15042610_15044714_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15042610 - 15044714
Intron Length:
2105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTCCA
5'SS Class:
major
3'SS Sequence:
TTTCTCTGTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GCTGCATTAATT
Flanking Amino Acid:
TMGKSQELEKKEARDVHQML
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1.1
64.6
41.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
83.7
0.76
0.9
77
37.2
Minor 5ss
33.5
-1.9
3
43
43.7
Minor BPS
59.9
0.39
1.7
73.64
43.4

Associated Gene:

Gene:
SH2D4A
Ensembl Gene ID:
ENSAPLG00000014421
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015033
15036442 - 15046672
10231