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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15044875_15045492_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15044875 - 15045492
Intron Length:
618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCTAA
U12 Branch Point Sequence:
ATTCCTAAGACC
Flanking Amino Acid:
QLASEQGKEARDTNCSVTPS
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.8
35.5
Major BPS
59.6
0.24
1.3
58.7
39.9
Major PPT
78.4
0.64
0.8
76.7
32
Minor 5ss
40.6
-1
2.8
52.8
44.1
Minor BPS
46.8
-0.2
1.9
62.38
37

Associated Gene:

Gene:
SH2D4A
Ensembl Gene ID:
ENSAPLG00000014421
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015033
15036442 - 15046672
10231