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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15045011_15046669_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15045011 - 15046669
Intron Length:
1659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGATGGA
5'SS Class:
major
3'SS Sequence:
ATATCTGTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATAATAT
U12 Branch Point Sequence:
TGTCCGATAATA
Flanking Amino Acid:
VRAAIIPPDQHGWRFQLRAF
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.1
65.7
40.5
Major BPS
58.7
0.22
1.1
55.4
40
Major PPT
77
0.61
1
73.8
40.9
Minor 5ss
30
-2.3
3.4
40.4
45.8
Minor BPS
48.3
-0.1
2.3
66.78
39.5

Associated Gene:

Gene:
CDKL2
Ensembl Gene ID:
ENSAPLG00000014440
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041303
15037714 - 15064779
27066