About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15045653_15046488_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15045653 - 15046488
Intron Length:
836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGCGAA
U12 Branch Point Sequence:
GTTTGCGAAAGA
Flanking Amino Acid:
KQQKKPPLRKASGKSVKWKL
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
49.7
-0
1.4
50.2
45.2
Major PPT
82.5
0.73
0.8
73.6
36.3
Minor 5ss
38.8
-1.3
3
52.9
44.3
Minor BPS
40.6
-0.7
2.7
59.27
46.6

Associated Gene:

Gene:
SH2D4A
Ensembl Gene ID:
ENSAPLG00000014421
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015033
15036442 - 15046672
10231