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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15054969_15055752_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15054969 - 15055752
Intron Length:
784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TTTGTCTTGACT
Flanking Amino Acid:
RGVAFCHSHNIIHRDIKPEN
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1.3
81.8
38.5
Major BPS
68
0.45
1
57.8
39
Major PPT
84.5
0.78
0.8
80.7
31.3
Minor 5ss
40.7
-1
2.8
50.8
39
Minor BPS
77
0.93
1.3
90.53
33.5

Associated Gene:

Gene:
CDKL2
Ensembl Gene ID:
ENSAPLG00000014440
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041303
15037714 - 15064779
27066
ENSAPLT00000015085
15050681 - 15062600
11920