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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15060125_15060583_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15060125 - 15060583
Intron Length:
459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATTACA
Flanking Amino Acid:
MGPLPGNHNYRVDEKSKKYL
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71
34.5
Major BPS
100
1.24
0.5
100
0
Major PPT
90.4
0.91
0.7
85.2
28
Minor 5ss
34.6
-1.7
3.5
45.7
49.5
Minor BPS
62.1
0.37
1.9
80.12
35.1

Associated Gene:

Gene:
CDKL2
Ensembl Gene ID:
ENSAPLG00000014440
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041303
15037714 - 15064779
27066
ENSAPLT00000015085
15050681 - 15062600
11920