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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15065554_15065654_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15065554 - 15065654
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGACAC
5'SS Class:
major
3'SS Sequence:
CTCGTCTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
GGCTGCTGACCC
Flanking Amino Acid:
QYHCDDCGICRIGPKEDFFH
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
62.3
38.4
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
75.4
0.57
0.8
72.7
32.1
Minor 5ss
25.7
-2.8
3.1
32.7
42.3
Minor BPS
44.1
-0.4
2.1
52.58
44.5

Associated Gene:

Gene:
RCHY1
Ensembl Gene ID:
ENSAPLG00000014976
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015600
15064910 - 15069301
4392