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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15066257_15066354_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15066257 - 15066354
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTAC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTGTCTAATA
Flanking Amino Acid:
SRQDCPICLEDIHTSRVEAR
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.5
32.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
64.9
0.34
1
60
39.5
Minor 5ss
38.7
-1.3
3
49.2
47.3
Minor BPS
56.6
0.2
2
75.53
36.4

Associated Gene:

Gene:
RCHY1
Ensembl Gene ID:
ENSAPLG00000014976
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015600
15064910 - 15069301
4392