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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15066414_15067678_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15066414 - 15067678
Intron Length:
1265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAAGCAC
5'SS Class:
major
3'SS Sequence:
GTTTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TTCTTCTTACCA
Flanking Amino Acid:
RVLPCGHLLHKTCYEEMLKE
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.1
60.1
39
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
90.7
0.92
0.7
88.7
28.3
Minor 5ss
32.1
-2
3.4
41.5
39.6
Minor BPS
70
0.62
1.6
78.35
38.8

Associated Gene:

Gene:
RCHY1
Ensembl Gene ID:
ENSAPLG00000014976
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015600
15064910 - 15069301
4392