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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15067706_15067964_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15067706 - 15067964
Intron Length:
259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTTTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ATCTTCTGAATT
Flanking Amino Acid:
HKTCYEEMLKEGYRCPLCMH
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
84.6
33.2
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
77.7
0.62
0.9
72.1
37.9
Minor 5ss
42.9
-0.8
2.9
57
41.2
Minor BPS
67
0.61
1.4
78.66
37.9

Associated Gene:

Gene:
RCHY1
Ensembl Gene ID:
ENSAPLG00000014976
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015600
15064910 - 15069301
4392