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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15068086_15069061_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15068086 - 15069061
Intron Length:
976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
CCTATATACGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAC
U12 Branch Point Sequence:
CTTTCCTATATA
Flanking Amino Acid:
PTEYQNMMVEILCNDCNARS
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
61.6
0.29
1
59
37.6
Major PPT
63.6
0.31
0.9
58.6
36.2
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
56
0.18
2
70.72
41.9

Associated Gene:

Gene:
RCHY1
Ensembl Gene ID:
ENSAPLG00000014976
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015600
15064910 - 15069301
4392