About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15089427_15089526_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15089427 - 15089526
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAACCAA
U12 Branch Point Sequence:
GCTGGGGAAACC
Flanking Amino Acid:
PPIGTVGLTEDEAISTHGKD
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
76.9
38.6
Major BPS
45.9
-0.2
1.1
50.8
33.6
Major PPT
79.1
0.66
1
76.3
37.7
Minor 5ss
32.8
-2
3.7
45.9
49.3
Minor BPS
31
-1.4
2.7
41.71
45.4

Associated Gene:

Gene:
GSR
Ensembl Gene ID:
ENSAPLG00000000763
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001017
15088731 - 15094615
5885