About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15090187_15090299_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15090187 - 15090299
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGGACA
5'SS Class:
major
3'SS Sequence:
GTTGCTTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
ACCTTCTCACCA
Flanking Amino Acid:
TGVDVWKHSRVHAVTKCPSG
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.1
64.9
40.7
Major BPS
85
0.87
0.8
85.6
23
Major PPT
75.4
0.57
0.9
69.4
36.8
Minor 5ss
38.2
-1.3
3
40.8
45.3
Minor BPS
48.2
-0.1
1.8
56.94
42.8

Associated Gene:

Gene:
GSR
Ensembl Gene ID:
ENSAPLG00000000763
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001017
15088731 - 15094615
5885