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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15090387_15090800_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15090387 - 15090800
Intron Length:
414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGCTG
5'SS Class:
major
3'SS Sequence:
GGTCCCTGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAG
U12 Branch Point Sequence:
ATCCTCTCAGAG
Flanking Amino Acid:
KSSLLIRRDKVLRMFDSLVS
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.2
0.36
1.3
55.4
48.8
Major BPS
58.6
0.22
1.5
69
38.9
Major PPT
63
0.29
1
53.7
41.4
Minor 5ss
38.8
-1.3
3.6
55.9
48.3
Minor BPS
42.4
-0.7
1.8
44.64
41.1

Associated Gene:

Gene:
GSR
Ensembl Gene ID:
ENSAPLG00000000763
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001017
15088731 - 15094615
5885