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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15091240_15091340_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15091240 - 15091340
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TGCTGCTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTAAA
U12 Branch Point Sequence:
TGTGGTAAAACT
Flanking Amino Acid:
PSVPPDSEVPGASLGITSDG
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.6
37.6
Major BPS
60.1
0.25
1.3
61.7
43.1
Major PPT
79.2
0.66
0.9
72.7
37.5
Minor 5ss
30.2
-2.3
2.8
34
35
Minor BPS
42.7
-0.4
2.3
64.9
45.7

Associated Gene:

Gene:
GSR
Ensembl Gene ID:
ENSAPLG00000000763
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001017
15088731 - 15094615
5885