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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15093903_15094496_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
15093903 - 15094496
Intron Length:
594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
TTCTTCTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTGAC
U12 Branch Point Sequence:
TTCTTCTCCACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
72.2
32.2
Major BPS
54.8
0.12
1.1
46.8
37.9
Major PPT
84.5
0.78
0.7
80
25.6
Minor 5ss
33.2
-1.9
2.8
42.6
38.5
Minor BPS
54.3
0.13
2
70.77
41.8

Associated Gene:

Gene:
GSR
Ensembl Gene ID:
ENSAPLG00000000763
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001017
15088731 - 15094615
5885
Gene:
PPP2CB
Ensembl Gene ID:
ENSAPLG00000019492
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041359
15093830 - 15106314
12485