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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15130100_15137224_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15130100 - 15137224
Intron Length:
7125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTGCCCTGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TGTTTTATAATC
Flanking Amino Acid:
KRFYFDVGSNRFNLRKRSPF
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
69.7
42.4
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
69.7
0.44
1
64.4
36.6
Minor 5ss
31.3
-2.1
3.6
46.8
48.5
Minor BPS
61.1
0.33
1.5
71.34
33.8

Associated Gene:

Gene:
PURG
Ensembl Gene ID:
ENSAPLG00000026522
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028176
15130027 - 15138441
8415