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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15144564_15146761_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15144564 - 15146761
Intron Length:
2198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTAC
5'SS Class:
major
3'SS Sequence:
TAATCTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTGGGCTTAATC
Flanking Amino Acid:
CYLFHVSSMSGFPKGLKRLL
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
63
38.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
73.7
0.53
0.9
71.3
38.9
Minor 5ss
36
-1.6
3.4
49.9
46.7
Minor BPS
59.6
0.28
1.9
69.56
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001616
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002014
15143632 - 15183185
39554