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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15146911_15148621_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15146911 - 15148621
Intron Length:
1711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAAGCTT
5'SS Class:
major
3'SS Sequence:
TATTTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCTCCTTTAAAC
Flanking Amino Acid:
VELADVANEKLKCKELWSLN
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
69.5
40.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
91.8
0.94
0.7
84.8
35.4
Minor 5ss
37.8
-1.4
3.6
56.2
42.6
Minor BPS
68.3
0.55
1.4
72.99
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001616
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002014
15143632 - 15183185
39554