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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15148772_15150721_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15148772 - 15150721
Intron Length:
1950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTACGTACA
5'SS Class:
major
3'SS Sequence:
CTTTCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TAAGTATTAATC
Flanking Amino Acid:
QKLYAATDAYAGFIIYQKLK
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.3
71.8
39.9
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
89.3
0.88
0.6
84.3
23.5
Minor 5ss
36.3
-1.5
2.9
42.3
37.7
Minor BPS
52.3
0.05
1.7
61.13
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001616
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002014
15143632 - 15183185
39554