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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15152787_15153363_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15152787 - 15153363
Intron Length:
577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGGCTT
5'SS Class:
major
3'SS Sequence:
TTTTAACTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTGTTTAATT
Flanking Amino Acid:
DSSGQPGSLQRAAEILADIS
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.3
73.4
43.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.8
0.76
0.8
74.7
39.9
Minor 5ss
32.1
-2
3.4
47.7
47.8
Minor BPS
74.8
0.86
1.7
91.31
32.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001616
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002014
15143632 - 15183185
39554