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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15153782_15154463_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15153782 - 15154463
Intron Length:
682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGAGA
5'SS Class:
major
3'SS Sequence:
GTTTTCTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
AAAAAAATAATA
Flanking Amino Acid:
EEYLNNAMPEEECATDNKHN
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.5
39.9
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
82.1
0.72
0.7
81.3
30.7
Minor 5ss
31.7
-2.1
3.1
40.5
45.2
Minor BPS
41.4
-0.6
1.8
48.73
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001616
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002014
15143632 - 15183185
39554