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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15157462_15159115_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15157462 - 15159115
Intron Length:
1654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTACTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GCTTTTTTTACT
Flanking Amino Acid:
SLMEDQVLQLTMSGIPACLL
Intron Amino Acid Position:
570

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1.2
87
30
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
90.3
0.91
0.7
86.2
26.6
Minor 5ss
38.8
-1.3
2.8
50.6
39.2
Minor BPS
62
0.46
1.6
75.76
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001616
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002014
15143632 - 15183185
39554