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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15159185_15159693_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15159185 - 15159693
Intron Length:
509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
CTTGGTGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
CCTTCTGTGACA
Flanking Amino Acid:
QSKNVRGGIKAGQYRVIYMT
Intron Amino Acid Position:
593

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.4
66.3
45.2
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
75.5
0.57
1
68.6
42
Minor 5ss
37.8
-1.4
3
47.3
41.1
Minor BPS
52.5
0.07
2.1
65.32
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001616
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002014
15143632 - 15183185
39554