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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15159777_15160732_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15159777 - 15160732
Intron Length:
956

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCTGG
5'SS Class:
major
3'SS Sequence:
CTGTCCCCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTGCAT
U12 Branch Point Sequence:
CTGTCCCCACCA
Flanking Amino Acid:
DLLQDLDQTIGITLIAVDEA
Intron Amino Acid Position:
621

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
62.4
44.7
Major BPS
66.2
0.4
1.4
77.4
37.3
Major PPT
67.7
0.4
0.9
59.8
36.8
Minor 5ss
43.4
-0.7
2.9
52.7
46.4
Minor BPS
45.8
-0.3
2.1
60.08
45.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001616
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002014
15143632 - 15183185
39554