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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15160840_15161530_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15160840 - 15161530
Intron Length:
691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTCTTTTTATTT
Flanking Amino Acid:
LGSLKKTLPMVPIVALTATA
Intron Amino Acid Position:
657

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
81.3
33.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.6
0.91
0.7
89.1
25.9
Minor 5ss
42.8
-0.8
3.4
61.3
44.6
Minor BPS
57.7
0.32
1.6
71.36
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001616
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002014
15143632 - 15183185
39554