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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15161719_15162818_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15161719 - 15162818
Intron Length:
1100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
CTATTACTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGCATTTTAACA
Flanking Amino Acid:
DLKQFLTRKGSSSEYEFEEK
Intron Amino Acid Position:
719

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.8
91.6
26.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
77
0.61
0.8
74.6
35
Minor 5ss
38.2
-1.3
3.4
56.9
47.4
Minor BPS
64.8
0.46
1.3
68.05
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001616
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002014
15143632 - 15183185
39554