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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15162842_15162881_F

Intron Information:

Intron Rank:
18
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
15162842 - 15162881
Intron Length:
40

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCCCTACCA
5'SS Class:
major
3'SS Sequence:
AAAAAGACCACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
TGCCCTTCAAAA
Flanking Amino Acid:
KGSSSEYEFEEKVVSELTKL
Intron Amino Acid Position:
727

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.7
0.28
1.3
49.1
40.6
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
49
-0
1
36.5
39.1
Minor 5ss
16.3
-3.9
3.4
23.7
36.2
Minor BPS
49.5
-0
1.6
59.31
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001616
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002014
15143632 - 15183185
39554