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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15162998_15163596_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15162998 - 15163596
Intron Length:
599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTAGG
5'SS Class:
major
3'SS Sequence:
TCCTGTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTTTTCAAAACT
Flanking Amino Acid:
HHQFMRDEIQCVVATVAFGM
Intron Amino Acid Position:
766

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.2
63.8
47.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
80.6
0.69
0.8
76.2
32.4
Minor 5ss
39.6
-1.2
2.9
51.7
44.8
Minor BPS
57.2
0.3
2
80.09
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001616
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002014
15143632 - 15183185
39554