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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15171106_15174574_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15171106 - 15174574
Intron Length:
3469

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAT|GCATGTCCT
5'SS Class:
major
3'SS Sequence:
CTCTTCTTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCACAA
U12 Branch Point Sequence:
TTTCTGAGAATT
Flanking Amino Acid:
QRTPRRYLQYTALYGKLLTA
Intron Amino Acid Position:
1032

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.3
72.1
39
Major BPS
59.7
0.24
1
67
29.8
Major PPT
79.7
0.67
0.7
75.6
26.6
Minor 5ss
35.1
-1.7
4
55.3
42
Minor BPS
44.5
-0.3
2.3
70.92
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001616
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002014
15143632 - 15183185
39554