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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15181538_15183112_F

Intron Information:

Intron Rank:
31
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
15181538 - 15183112
Intron Length:
1575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGCTTTG
5'SS Class:
weak_major
3'SS Sequence:
GCATGGTTTGAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGTAAG
U12 Branch Point Sequence:
CCCCTTGTAAGA
Flanking Amino Acid:
ELFSDSQPKVSPNSPCCACA
Intron Amino Acid Position:
1328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.9
0.26
1.4
61.8
45.3
Major BPS
60.5
0.26
1.7
69.7
44.2
Major PPT
57.6
0.17
1.2
55.7
43.6
Minor 5ss
44.3
-0.6
2.9
58.6
46
Minor BPS
39.9
-0.7
2.1
42.58
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001616
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002014
15143632 - 15183185
39554