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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15183908_15194226_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15183908 - 15194226
Intron Length:
10319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCGGTGCG
5'SS Class:
major
3'SS Sequence:
TCTCCTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTA
Flanking Amino Acid:
SGSSGSKQSADHSNGSFNLK
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.4
62.9
40.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.6
0.71
0.8
76
32.4
Minor 5ss
27
-2.6
3.1
32.7
42.2
Minor BPS
61.7
0.36
1.7
75.93
35.7

Associated Gene:

Gene:
GTF2E2
Ensembl Gene ID:
ENSAPLG00000002511
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002541
15183745 - 15206555
22811