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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15194319_15194867_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15194319 - 15194867
Intron Length:
549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGCAG
5'SS Class:
major
3'SS Sequence:
TTCACTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
AAATCACTGATA
Flanking Amino Acid:
VLAKIVNYMKTRHQRGDTHP
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.1
54
44.7
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
84.4
0.77
0.8
76.5
37.4
Minor 5ss
28.4
-2.5
3.5
37.7
47.1
Minor BPS
46.4
-0.2
1.9
56.47
35.7

Associated Gene:

Gene:
GTF2E2
Ensembl Gene ID:
ENSAPLG00000002511
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002541
15183745 - 15206555
22811