About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15194976_15196716_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15194976 - 15196716
Intron Length:
1741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTCCTATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GGTTTTAAAATT
Flanking Amino Acid:
LKQKQWLMSEALVNNPKIEV
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.3
32.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79.9
0.67
0.9
73.1
36
Minor 5ss
30.9
-2.2
3.2
39
46.4
Minor BPS
47.1
-0.1
1.8
65.54
39.5

Associated Gene:

Gene:
GTF2E2
Ensembl Gene ID:
ENSAPLG00000002511
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002541
15183745 - 15206555
22811