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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15197450_15205277_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15197450 - 15205277
Intron Length:
7828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGGTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
GGGATATGAAAT
Flanking Amino Acid:
DKSCQFTVDEEFQKLWRSIP
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
85.2
32.2
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
83.4
0.75
0.9
77.3
37
Minor 5ss
37.2
-1.4
3.6
57.3
47.4
Minor BPS
42.7
-0.4
1.7
53.94
40.3

Associated Gene:

Gene:
GTF2E2
Ensembl Gene ID:
ENSAPLG00000002511
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002541
15183745 - 15206555
22811