About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15205394_15206435_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15205394 - 15206435
Intron Length:
1042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGAGAT
5'SS Class:
major
3'SS Sequence:
TTTCTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
GATCTCTTGACT
Flanking Amino Acid:
SMQEAGPKKIAPIQRRKKPA
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
70.6
33.2
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
92.8
0.96
0.6
88.6
20.9
Minor 5ss
34
-1.8
3.5
48.9
42.5
Minor BPS
69.1
0.68
1.2
78.29
37.4

Associated Gene:

Gene:
GTF2E2
Ensembl Gene ID:
ENSAPLG00000002511
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002541
15183745 - 15206555
22811