Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15216117_15216299_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

15216117 - 15216299

Intron Length:

183

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACCGCGG

5'SS Class:

major

3'SS Sequence:

TAAAAAAAAAAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TAAAAAA

U12 Branch Point Sequence:

ATCCGTGTAAAA

Flanking Amino Acid:

ELYLLFRPFKEGWGHPSLLR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.5

0.3

1.3

46.3

Major BPS

53.6

0.09

59.9

32.5

Major PPT

44.1

-0.3

1.1

33.2

Minor 5ss

34.6

-1.7

3.5

47.8

47.7

Minor BPS

40.9

-0.6

2.3

51.83

40.2

Associated Gene:

Gene:

RBPMS

Ensembl Gene ID:

ENSAPLG00000002808

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002835

15214773 - 15216968

2196