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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_15216224_15216299_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15216224 - 15216299
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGCGG
5'SS Class:
major
3'SS Sequence:
TCTTCTCTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGCGAC
U12 Branch Point Sequence:
TTTCTCTTCTCT
Flanking Amino Acid:
ELYLLFRPFKGYEGSLIKLT
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.5
0.3
1.3
46.3
49
Major BPS
42.5
-0.4
1.4
35.6
42.9
Major PPT
84.9
0.78
0.7
80.4
24.8
Minor 5ss
34.6
-1.7
3.5
47.8
47.7
Minor BPS
44.6
-0.3
3.6
80.81
41.1

Associated Gene:

Gene:
RBPMS
Ensembl Gene ID:
ENSAPLG00000002808
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022337
15214773 - 15219106
4334